Journal papers

2022

  1. F. A. Shaik, C. Lewuillon, A. Guillemette, B. Ahmadian, C. Brinster, B. Quesnel, D. Collard, Y. Touil, L. Lemonnier and M. C. Tarhan, “Pairing cells of different sizes in a microfluidic device for immunological synapse monitoring” Lab on a Chip, 22, 908-920, 2022.

2021

  1. Pinte S, Delfortrie S, Havet C, Villain G, Mattot V, Soncin F, “EGF repeats of epidermal growth factor-like domain 7 promote endothelial cell activation and tumor escape from the immune system”, Oncology Reports, in press
  2. Momoko Kumemura, Deniz Pekin, Vivek Anand Menon, Isabelle Van Seuningen, Dominique Collard and Mehmet Cagatay Tarhan, “Fabricating Silicon Resonators for Analysing Biological Samples”, Micromachines, 12 (12), 1546, 2021.
  3. Z. Yang, H. Benhabiles, K. Hammoudi, F. Windal, R. He, and D. Collard, “A generalized deep learning-based framework for assistance to the human malaria diagnosis from microscopic images,” Neural Computing and Applications, 2021, doi: 10.1007/s00521-021-06604-4.
  4. Silvent J, Robin M, Bussola Tovani C, Wang Y, Soncin F, Delgado S, Azaïs T, Sassoye C, Giraud-Guille MM, Sire JY, Nassif N, “Collagen Suprafibrillar Confinement Drives the Activity of Acidic Calcium-Binding Polymers on Apatite Mineralization”, Biomacromolecules 2021 Jul 12;22(7):2802-2814. doi: 10.1021/acs.biomac.1c00206
  5. Danoy M, Jellali R, Tauran Y, Bruce J, Leduc M, Gilard F, Gakière B, Scheidecker B, Kido T, Miyajima A, Soncin F, Sakai Y, Leclerc E, “Characterization of the proteome and metabolome of human liver sinusoidal endothelial-like cells derived from induced pluripotent stem cells”, Differentiation 2021 Jun 30;120:28-35.

2019

  1. S. Kaneda, J. Kawada, M. Shinohara, M. Kumemura, R. Ueno, T. Kawamoto, K. Suzuki, B.J. Kim, Y. Ikeuchi, Y. Sakai, D. Collard, H. Fujita, T. Fujii, Boyden chamber-based compartmentalized tumor spheroid culture system to implement localized anticancer drug treatment, Biomicrofluidics, 13, 5, 2019.
  2. Y. Tauran, J. P. Cerón-Carrasco, P. Rhimi, F. Perret, B. J. Kim, D. Collard, et al., “Size and Flexibility Define the Inhibition of the H3N2 Influenza Endonuclease Enzyme by Calix[n]arenes,” Antibiotics, vol. 8, p. 73, 2019.
  3. K. Hayashi, M. Kumemura, S. Kaneda, V. Menon, L. Jalabert, S. Tachikawa, M. C. Tarhan, T. Fujii, B.J. Kim and H. Fujita, “Optimization of surface treatment on MEMS probes for single-cell capture and release”, Sensors and Materials, 31, 2873-2881, 2019.
  4. T. Okitsu, E. Leblanc, D. Collard, H. Fujita, SMMiL-E, Japanese Bio-MEMS Laboratory in France, and the Role of Scientific Direction”, Sensors and Materials, 31, 9, 2019.
  5. Y. Tauran, M. Kumemura, M. C. Tarhan, G. Perret, F. Perret, L. Jalabert, D. Collard, H. Fujita and A.W. Coleman, “Direct measurement of the mechanical properties of a chromatin analog and the epigenetic effects of para-sulphonato-calix[4]arene“, Scientific Reports, 9, 5816, 2019.
  6. R. Usuba, J. Pauty, F. Soncin* and Y. Matsunaga,* “EGFL7 regulates sprouting angiogenesis and endothelial integrity in a human blood vessel model”, Biomaterials, 197, 305-316, 2019, (*co-last authors).
  7. M. Viallon, S. Assaf, A. Treizebré, H. Gidik, D. Dupont, G. Bedek, M. Caillibotte, B. Djafari- Rouhani, V. Thomy, Y. Pennec and V. Senez, ‘Modulation of the refractive properties of 1D and 2D photonic crystal polycrystalline silicon-based mem requency range’, Journal of Physics D: Applied Physics, 52(20), 205101, 2019.

2018

  1. G. Villain, L. Poissonnier, B. Noueihed, G. Bonfils, JC. Rivera, S. Chemtob, F. Soncin, V. Mattot, miR-126-5p promotes retinal endothelial cell survival through SetD5 regulation in neurons. Development;145(1), 2018.
  2. G. Villain, E. Lelievre, T. Broekelmann, O. Gayet, C. Havet, E. Werkmeister, R. Mecham, N. Dusetti, F. Soncin, V. Mattot, MAGP-1 and fibronectin control EGFL7 functions by driving its deposition into distinct endothelial extracellular matrix locations. FEBS J., 285(23):4394-4412, 2018.
  3. Shkurenko, A.N. Lazar, D. Collard, A. Navaza, B. Kim, Y. Tauran, F. Perret, C. Journet-Gautier, A.W. Coleman and K. Suwinska. The solid-state structures of organic salts formed by calix[4]arene dihydroxyphosphonic acid with nucleic bases cations: adeninium, cytosinium, guaninium and uracilium. Supramolecular Chemistry, 30(5-6), 2018. DOI: 10.1080/10610278.2018.1439171
  4. Y. Takayama, G. Perret, M. Kumemura, M. Ataka, S. Meignan, S. L. Karsten, H. Fujita, D. Collard, C. Lagadec, M. C. Tarhan, Developing a MEMS Device with Built-in Microfluidics for Biophysical Single Cell Characterization. Micromachines, 9, 275, 2018.
  5. J. Pauty, R. Usuba, I. Gayi Cheng, L. Hespel, H. Takahashi, K. Kato, M. Kobayashi, H. Nakajima, E. Lee, F. Yger, F. Soncin,* Y. T. Matsunaga,* « A Vascular Endothelial Growth Factor-Dependent Sprouting Angiogenesis Assay Based on an In Vitro Human Blood Vessel Model for the Study of Anti-Angiogenic Drugs », EBioMedicine, Volume 27,2018, pp. 225-236, (*: co-last author).
  6. Y. Tauran,* M. C. Tarhan,* L. Mollet,* J.B. Gerves, M. Kumemura, L. Jalabert, N. Lafitte, I. Byun, B.J. Kim, H. Fujita, D. Collard, F. Perret, K. Suwinska, C. Goutaudier and A.W. Coleman, “Elucidating the mechanism of the considerable mechanical stiffening of DNA induced by the couple Zn2+/Calix[4]arene-1,3-Odiphosphorous acid“, Scientific Reports, 8, 1226, 2018, (*: equal contribution).

2017

  1. M. Danoy, M. Shinohara, A. Riski-Safriti, D. Collard, V. Senez, and Y. Sakai, “Alteration of pancreatic carcinoma and promyeloblastic cell adhesion in liver microvasculature by coculture of hepatocytes, hepatic stellate cells and endothelial cells in a physiologically-relevant model,” Integrative Biology, vol. 9, pp. 350-361, 2017.
  2. L. Poulin, L. Peyrin-Biroulet, D. Collard, and M. Chamaillard, “Keeping the (S)toolbox Alive Outside of the Body for Drugs Discovery,” Gastroent, vol. 153, no. 6, p. 1690, 2017.
  3. L. Bresson, E. Leblanc, A.S. Lemaire, T. Okitsu, F. Chai “Autologous peritoneal grafts permit rapid reperitonealization and prevent postoperative abdominal adhesions in an experimental rat study”, Surgery, vol. 162, pp. 863-870, 2017.
  4. Ghinnagow R, De Meester J, Cruz LJ, Asport C, Corgnac S, Macho-Fernandez E, Soulard D, Fontaine J, Chaperot L, Charles J, Soncin F, Mami-Chouaic F, Pluma J, Faveeuw C, Trottein F, “Co-delivery of the NKT agonist α-galactosylceramide and tumor antigens to cross-priming dendritic cells breaks tolerance to self-antigens and promotes antitumor responses”, Oncoimmunology 2017 Aug 18;6(9):e1339855
  5. M. C. Tarhan, R. Yokokawa, L. Jalabert, D. Collard and H. Fujita, “Pick-and-place assembly of single microtubules by MEMS tweezers”, Small, 13, 1701136, 2017.
  6. G. Perret, T. Lacornerie, F. Manca, S. Giordano, M. Kumemura, N. Lafitte, L. Jalabert, M. C. Tarhan, E. Lartigau, F. Cleri, H. Fujita and D. Collard “Mesure de la dégradation bio-mécanique d’une fibre d’ADN sous l’effet des rayons X thérapeutiques”, Medecine sciences: M/S, 33(12), pp. 1026-1029, 2017.

2016

  1. G. Perret, T. Lacornerie, F. Manca, S. Giordano, M. Kumemura, N. Lafitte, et al., “Real-time mechanical characterization of DNA degradation under therapeutic X-rays and its theoretical modeling,” Microsystems & Nanoengineering, vol. 2, p. 16062, 12/05/online 2016.
  2. S. L. Karsten, M. Kumemura, L. Jalabert, N. Lafitte, L. C. Kudo, D. Collard, et al., “Direct electrical and mechanical characterization of in situ generated DNA between the tips of silicon nanotweezers (SNT),” Lab on a Chip, vol. 16, pp. 2099-2107, 2016
  3. M. C. Tarhan, N. Lafitte, Y. Tauran, L. Jalabert, M. Kumemura, G. Perret, B.J. Kim, A. W. Coleman, H. Fujita and D. Collard, “A rapid and practical technique for real-time monitoring of biomolecular interactions using mechanical responses of macromolecules”, Scientific Reports, 6, 28001, 2016. doi:10.1038/srep28001.
  4. Pinte S, Caetano B, Le Bras A, Havet C, Villain G, Dernayka R, Duez C, Mattot V, Soncin F. “Endothelial Cell Activation Is Regulated by Epidermal Growth Factor-like Domain 7 (Egfl7) during Inflammation”, J Biol Chem. 2016 Nov 11;291(46):24017-24028
  5. Pannier D, Philippin-Lauridant G, Baranzelli MC, Bertin D, Bogart E, Delprat V, Villain G, Mattot V, Bonneterre J, Soncin F. “High expression levels of egfl7 correlate with low endothelial cell activation in peritumoral vessels of human breast cancer”, Oncol Lett. 2016 Aug;12(2):1422-1428

 

Conference proceedings

2022

  1. B. Ahmadian, D. Mbujamba, J.C. Gerbedoen, M. Kumemura, H. Fujita, D. Collard, S. Dabo, C. Lagadec and M. C. Tarhan, “Single cell classification using statistical learning on mechanical properties measured by MEMS tweezers”, 35th IEEE International Conference on Micro Electro Mechanical Systems (MEMS’22), pp. 317, 2022.

2021

  1. Q. Rezard, G. Perret, J.C. Gerbedoen, D. Pekin, F. Cleri, D. Collard, C. Lagadec and M. C. Tarhan, “Developing a MEMS device for high-throughput multi-parameter single cell biophysical analysis”, IEEE International Conference on Micro Electro Mechanical Systems (MEMS’21), pp. 494, 2021.

2020

  1. E. Delannoy, A. Treizebre, and F. Soncin. “New microfluidic designs for high-throughput analysis of angiogenesis, blood vessel permeability and endothelial activation”, 24rd International Conference on Miniaturized Systems for Chemistry and Life Sciences (μTAS’20), pp. 845, 2020.
  2. F. A. Shaik, C. Lewuillon, Y. Touil, A. Guillemette, B. Quesnel, C. Brinster, L. Lemonnier, D. Collard and M. C. Tarhan, “Pairing cells with different dimensions in a microfluidic device using a unidirectional flow”, 24rd International Conference on Miniaturized Systems for Chemistry and Life Sciences (μTAS’20), pp. 765, 2020.
  3. Q. Rezard, G. Perret, J.C. Gerbedoen, D. Pekin, D. Collard, C. Lagadec and M. C. Tarhan, “A high-throughput MEMS device for mechanical detection of cancer cells”, 24rdInternational Conference on Miniaturized Systems for Chemistry and Life Sciences (μTAS’20), pp. 805, 2020.
  4. D. Pekin, G. Perret, Q. Rezard, J.C. Gerbedoen, D. Collard, C. Lagadec and M. C. Tarhan, “Subcellular imaging during single cell mechanical characterization”, IEEE International Conference on Micro Electro Mechanical Systems (MEMS’20), pp. 62, Vancouver, Canada, 2020.

2019

  1. F. A. Shaik, C. Lewuillon, Y. Touil, A. Guillemette, B. Quesnel, C. Brinster, L. Lemonnier, D. Collard and M. C. Tarhan, “Monitoring immunological synapses at single cell level in a microfluidic device”, 23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences (μTAS’19), pp. 634-5, Basel, Switzerland, 2019.
  2. D. Pekin, G. Perret, M. Kumemura, L. Jalabert, S. Meignan, H. Fujita, D. Collard and M. C. Tarhan, “Real-time measurement of the physical properties of DNA-ligand complexes”, 23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences (μTAS’19), pp. 892-3, Basel, Switzerland, 2019.
  3. M. C. Tarhan, A. Mutel, L. Desrues, D. Collard and Hélène Castel, “Glioblastoma migration along constraints with different geometries: How to mimick brain parenchyma invasion?” 23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences (μTAS’19), pp. 352-3, Basel, Switzerland, 2019.
  4. V. Senez ‘Microfluidic Model of Pancreatic Tumors to Assess Therapeutic Strategies’, XVII Annual International Congress on Drug Discovery Science and technology, Kyoto, Japan, 25-27th July 2019.

2018

  1. Y. Takayama, G. Perret, M. Kumemura, C. Lagadec, S. Meignan, M. Ataka, H. Fujita, M. C. Tarhan and D. Collard, “Simultaneous electrical and mechanical characterization of single cells by an integrated device”, A practical single cell analysis method for mechanical characterization of cancer cells”, IEEE International Conference on Micro Electro Mechanical Systems (MEMS’18), pp. 297-300, Belfast, Northern Ireland, 2018.
  2. Y. Tauran, G. Perret, L. Jalabert, M. Kumemura, A. Brioude, H. Fujita, D. Collard, “Mechanical effects of a type 2 endonuclease on DNA trapped by Silicon Nanotweezers at high molecular density,”, 22th International Conference on Miniaturized Systems for Chemistry and Life Sciences,  (μTAS’18) Kaohsiung, Taiwan, 2018.

2017

  1. G. Perret, Y. Takayama, M. Kumemura, S. Meignan, H. Fujita, C. Lagadec, D. Collard and M. C. Tarhan, “Mechanical characerization of single cells to distinguish different breast cancer cells”, 21st International Conference on Miniaturized Systems for Chemistry and Life Sciences (μTAS’17), pp. 826-7, Savannah, GA, USA, 2017.
  2. Baetens, G. Perret, Y. Takayama, M. Kumemura, L. Jalabert, S. Meignan, C. Lagadec, H. Fujita, D. Collard and M. C. Tarhan, “A practical single cell analysis method for mechanical characterization of cancer cells”, IEEE International Conference on Micro Electro Mechanical Systems (MEMS’17), pp. 608-11, Las Vegas, NV, USA, 2017.

2016

  1. G. Perret, M. C. Tarhan, N. Lafitte, L. Jalabert, M. Kumemura, T. Lacornerie, E. Lartigau, F. Cleri, H. Fujita and D. Collard, “DNA mechanical characterization inside biological buffer by the Double-Actuator Silicon Nano Tweezers”, 8th Asia-Pacific Conference on Transducers and Micro-Nano Technology (APCOT’16), pp. 31, Kanazawa, Japan, 2016.
  2. M. C. Tarhan, G. Perret, N. Lafitte, M. Kumemura, L. Jalabert, Y. Takayama, S. L. Karsten, H. Fujita and D. Collard, “Manipulating Different Biological Samples by Silicon Nanotweezers”, 8th International Conference on Microtechnologies in Medicine and Biology (MMB’16), pp. 62-63, Seoul, Korea, 2016.
  3. G. Perret, N. Lafitte, M. C. Tarhan, L. Jalabert, M. Kumemura, T. Lacornerie, E. Lartigau, F. Cleri, H. Fujita and D. Collard, “3D Humidity Imager in Micro Environment Based on DNA Conductivity and Rigidity Measured by Silicon Nano Tweezers”, IEEE International Conference on Micro Electro Mechanical Systems (MEMS’16), pp. 275-8, Shanghai, Gyeongju, Korea, 2016.
  4. M. C. Tarhan, M. Kumemura, S. Kaneda, Y. Takayama, G. Perret, T. Fujii, D. Collard, H. Fujita, “Trapping of a Cell and its Mechanical Characterization by Silicon Nanotweezers”, Proceedings of International Conference on Single Cell Research, P2-04, pp. 104, Tokyo, Japan, 16~17th November, 2016.

 

Invited talks

2021

  1. M. C. Tarhan, “MEMS sensors for single-cell biophysical analysis”, (Invited), 38th Symposium on Sensors, online, November 9-11, 2021
  2. M. C. Tarhan, “Silicon actuators for biological applications”, (Invited), International Symposium on Upcoming Prominent ENgineering solutions (ISUPEN 2021), online, August 30, 2021.
  3. M. C Tarhan, “Mechanosensing of biological samples with silicon-based microsystems”, (Invited), 16th IEEE International Conference on Nano/Micro Engineered & Molecular Systems (IEEE-NEMS 2021), Xiamen, China, April 25-29, 2021.

2020

  1. D. Collard, M.C Tarhan, “Silicon Nanotweezers for biomolecules and cells manipulations and characterisations” (Invited), International Conference on Robotics and Automation, ICRA 2020, Workshop on the applications of micro-nanorobotics, Paris, France, Mai 31-June 15 2020.
  2. V. Senez, “Monitoring organ on a chip with impedance spectroscopy: application to infection and cancer”, 13th International Workshop on Impedance Spectroscopy, 2-4 December, 2020.

2019

  1. V. Senez, “Miniaturized Organs on a Chip and Bio-Impedance”, keynote lecture, XVII International Conference on Electrical Bioimpedance (ICEBI), Joinville, Brazil, 9-13 June, 2019.

2018

  1. M. C. Tarhan, “Handling and Analyzing Biological Samples with MEMS Grippers”, Nano S&T, Potsdam, Germany, 2018.